Chemiosmosis Ap Biology Essays

Learning objectives:

  • Identify whether an organism is a heterotroph, photoautotroph or chemoautotroph based on their sources of energy and organic carbon
  • Explain the difference between substrate-level phosphorylation and oxidative phosphorylation
  • Explain how ATP synthase exploits the proton motive force to make ATP
  • Explain how proton gradients are generated across membranes
  • Identify what molecule is oxidized, and what molecule is reduced in a redox reaction
  • Explain the role of NAD+/NADH as an electron shuttle
  • Compare and contrast aerobic and anaerobic respiration

Types of cellular metabolism

The energy for ATP synthesis comes from organic molecules (such as carbohydrates), or from sunlight, or from inorganic electron donors. We can classify organisms according to their source of energy and organic carbon:

  • heterotrophs – get energy and organic carbon from metabolism of pre-existing organic compounds (food)
  • photoautotrophs – use energy from sunlight to make ATP and their own organic carbon compounds from carbon dioxide
  • chemoautotrophs – use energy from inorganic chemicals to make ATP and their own organic carbon compounds from carbon dioxide

Metabolic pathways carry out reactions that capture energy from these various sources (organic compounds, sunlight or chemicals) and couple them to synthesis of ATP from ADP.

Summary of cellular respiration essentials

  • To make ATP, all a cell needs is a membrane, a gradient of protons across the membrane, a membrane-localized molecular machine called ATP synthase, and ADP and inorganic phosphate.
  • The energy to power ATP synthesis comes from the proton gradient across the membrane.
  • Heterotrophs, phototrophs and chemotrophs differ in the source of energy used to create and maintain the proton gradient – either chemical energy from organic molecules (heterotrophs), light energy (phototrophs), or chemical energy from inorganic molecules (chemotrophs).
  • Regardless of the source of energy, the proton gradient is created by the flow of electrons down an electron transport chain*. Components of the electron transport chain couple electron transfers (oxidation-reduction reactions) to active transport of protons across the membrane, a process called chemiosmosis.
  • In cellular respiration, the electrons for the electron transport chain come from NADH (which gets electrons from food molecules), and ultimately go to oxygen, or another terminal electron acceptor, to form water molecules.
  • We define cellular respiration as the flow of electrons down the electron transport chain, and oxidative phosphorylation refers to the coupling of electron transfer reactions (oxidation-reduction reactions) to phosphorylation of ADP to make ATP.

*except in some phototrophic archaea that use bacteriorhodopsin to directly pump protons across the membrane using light energy – we’ll see that in the section on photosynthesis.


The standard freshman biology textbook presentation focuses narrowly on glucose metabolism by animal cells, barely touches on fats and amino acids, and ignores most of the metabolic diversity of life. Moreover, the standard textbook version of how this elaborate metabolic network evolved beginning with glycolysis is probably wrong, accordingly to the compelling essay by Lane et al. (2010).

In this class, we will take an evolutionary approach that begins with concepts and processes fundamental to all living cells, that must have been present in the last universal common ancestor (LUCA).

Cellular Respiration: the BIG Picture

Before we get into any of the details, let’s start with the big picture concept of how cellular respiration works and what it accomplishes:

ATP synthesis

We find that all cells – Bacteria, Archaea, Eukarya – use the energy released via ATP hydrolysis (ATP –> ADP + Pi; Pi = inorganic phosphate; ΔG = -7.3 kcal/mol) to perform most of the cell’s work. How do cells make ATP? Cells can make ATP in either of two ways: either by substrate-level phosphorylation of ADP, or by oxidative phosphorylation of ADP.

  • ATP = adenosine triphosphate
  • ADP = adenosine diphosphate

Substrate-level phosphorylation means that a phosphate is transferred to ADP from a high-energy phosphorylated organic compound. We will see in the section on metabolic pathways that a couple of the enzymes in glycolysis make ATP through substrate-level phosphorylation, as well as an enzyme in the citric acid cycle. However, only a small amount of ATP is made this way in cells undergoing respiration.

Substrate-level phosphorylation transfers phosphate from a phosphorylated organic compound to ADP to make ATP. Image from Wikimedia Commons

Oxidative phosphorylation synthesizes the bulk of a cell’s ATP during cellular respiration. A proton-motive force, in the form of a large proton concentration difference across the membrane, provides the energy for the membrane-localized ATP synthase (a molecular machine) to make ATP from ADP and inorganic phosphate (Pi). The proton gradient is generated by a series of oxidation-reduction reactions carried out by protein complexes that make up an electron transport chain in the membrane. The term oxidative phosphoryation, then, refers to phosphorylation of ADP to ATP coupled to oxidation-reduction reactions.

Oxidative phosphorylation uses the energy from a membrane proton gradient to power ATP synthesis from ADP and inorganic phosphate . Image from Wikimedia Commons

The proton-motive force is a combination of a difference in proton (H+ ion) concentrations across a membrane, and the resulting electrical potential. All prokaryotic cells (Bacteria and Archaea) maintain a proton gradient (pH gradient) across their plasma membranes. Mitochondria maintain a proton gradient across the inner mitochondrial membrane. The interior of the bacterial cell (or the mitochondrial matrix) is relatively alkaline, whereas the exterior periplasmic space (or the mitochondrial intermembrane space) is relatively acidic. Because protons are positively charged, an imbalance of protons also creates an electrical charge difference across the membrane. This proton motive force is a form of stored energy, and protons returning across the membrane down their concentration and electrical charge gradients release free energy that can be harnessed by ATP synthase to make ATP. The lipid bilayer membrane is almost impermeable to protons, so the proton gradient is stable and normally does not discharge except via ATP synthase, or via proton channels that may open in the membrane.

The electron transport chain takes electrons from reduced electron carriers (NADH) and passes them to a terminal electron acceptor (O2), and uses the free energy released to generate a membrane proton gradient. Note that the ATP synthase is not part of the electron transport chain, but is shown here because it uses the proton gradient to power ATP synthesis. The ETC builds up the proton gradient, while the ATP synthase discharges the proton gradient in the process of making ATP.

This proton gradient is analogous to water stored in an elevated reservoir. The higher the water level in the reservoir, the more potential energy is available to accomplish mechanical work like turning a water wheel to grind grain. In the same way, the greater the difference in proton concentrations across the membrane, the more energy is available for ATP synthase to make ATP. Indeed, the ATP synthase complex even resembles a water wheel, in that the flow of protons down their concentration gradient, through ATP synthase, causes a part of ATP synthase to rotate.

F1ATP Synthase – watch the video below and know this!

The ATP synthase enzyme complex is located in the membrane, and is a remarkable rotor-stator molecular machine (Stock et al. 1999).

The proton motive force drives protons through a channel in the ATP synthase, and turns the rotor at approx 100 rpm. The turning rotor changes the shape of the cytoplasmic subunits (called the F1 ATPase), which bind ADP and inorganic phosphate and bond them together to form ATP. Each 360 degree turn of the rotor results in synthesis of 3 ATP molecules.

The ATP synthases in mitochondria, chloroplasts, and Bacteria are all structurally similar, and their amino acid sequence similarities are consistent with a common evolutionary origin (Watt et al. 2010). Lesser degrees of similarity, and more distant evolutionary relationships, exist with Archaeal ATP synthases and with vacuolar membrane ATPases. Vacuolar ATPases pump protons across the membrane using the energy from ATP hydrolysis. Indeed, Bacterial and mitochondrial ATP synthases can work in reverse to hydrolyze ATP and pump protons across the membrane to increase the membrane proton gradient (see end of video above).

What creates the proton gradient across the membrane?

Chemiosmosis – this is really important!

We have seen how ATP synthase acts like a proton-powered turbine, and uses the energy released from the down-gradient flow of protons to synthesize ATP. The process of pumping protons across the membrane to generate the proton gradient is called chemiosmosis. Chemiosmosis is driven by the flow of electrons down the electron transport chain, a series of protein complexes in the membrane that forms an electron bucket brigade. Each of these protein complexes accepts and passes on electrons down the chain, and pumps a proton across the membrane for each electron it passes on. Ultimately, the last complex in the electron transport chain passes the electrons to molecular oxygen (O2) to make water, in the case of aerobic respiration.

We define respiration as the passage of electrons down the electron transport chain. We breathe (respire) oxygen because oxygen is the terminal electron acceptor, the end of the line for our mitochondrial electron transport chain. The video below shows the details of the electron transfer reactions, and how they are coupled to pumping protons across the membrane. This is a form of active transport, because the electron transfers release free energy that is used to pump protons against their concentration gradient.

Watch this video to understand how the ETC creates a proton gradient

My lecture explanation:

Many bacteria can use other terminal electron acceptors when oxygen is unavailable; we say that they carry on anaerobic respiration, when the electron transport chain functions in the absence of oxygen, using an alternative terminal electron acceptor.

Redox Reactions and NAD+/NADH

The transfer of electrons from one molecule to another is called an oxidation-reduction, or redox reaction. A molecule that loses electrons is oxidized; a molecule that gains electrons is reduced. Different molecules have different tendencies to gain or lose electrons, called the redox potential. A redox reaction between a pair of molecules with a large difference in redox potential results in a large release of free energy.

In aqueous environments, the transferred electrons pick up protons. The result is that hydrogen atoms (a proton + electron = hydrogen) are transferred, and many enzymes that carry out redox reactions are called dehydrogenases. Living cells are the original hydrogen fuel cells.

Cellular energy metabolism features a series of redox reactions. Heterotrophs oxidize (take electrons from) organic molecules (food) and reduce (give them to) an electron carrier molecule, called NAD+ (in the oxidized form) that accepts electrons from food to become NADH (the reduced form). NADH then cycles back to NAD+ by giving electrons to (reducing) the first complex of the membrane electron transport chain. Thus NAD+/NADH is a key intermediary in shuttling electrons from food molecules to the electrons transport chain for respiration.

For more info, my lecture snippet on NAD+ and NADH:

NADH is a high-energy molecule. The oxidation of NADH: NADH + H+  + ½O2 -> NAD+ + H2O is highly exergonic, with a standard free energy change of -54 kcal/mol (7-fold greater than the standard free energy change for ATP hydrolysis of -7.3 kcal/mol).

The membrane electron transport chain and chemiosmosis is a strategy for cells to maximize the amount of ATP they can make from the large amounts of free energy available in NADH. The electron transport chain subdivides the oxidation of NADH by O2 to a series of lower energy redox reactions, which are used to pump protons across the membrane. The resulting H+ concentration (pH) gradient across the membrane is a form of stored energy, analogous to an electric battery.

Anaerobic respiration in bacteria

The amount of energy released by these redox reactions, and thus the amount of energy available for ATP synthesis, depends on the redox potential of the terminal electron acceptor. Oxygen (O2) has the greatest redox potential, and thus aerobic respiration results in the most ATP synthesized. Bacteria and Archaea can use other terminal electron acceptors with lower redox potential when oxygen is not available. This anaerobic respiration produces less ATP.

Bacteria can modify their electron transport chains to use a variety of electron donors and electron acceptors, and will switch to the best available in their environment. In marine sediments, microbial communities stratify according to redox potential. The deeper, more anoxic layers use electron acceptors with progressively lower reducing potential.

In addition to ATP synthesis, prokaryotic cells can use the proton motive force to supply energy for active transport of molecules across the plasma membrane, and to power the motor complex that rotates the bacterial flagellum.

Generalized explanation of aerobic and anaerobic respiration:

An evolutionary perspective

The generation of a proton gradient across a membrane and chemiosmosis are universal to life on earth, and are fundamental ways for cells to make a living. Lane and colleagues speculate that “proton power” may have been the earliest form of energy metabolism, essential to, and pre-dating, the last universal common ancestor, LUCA (Lane, 2009; Lane et al. 2010).

The earliest cells, prokaryotes living in an early Earth devoid of free oxygen, used various alternative electron acceptors to carry on anaerobic cellular respiration. After cyanobacteria invented oxygenic photosynthesis and pumped oxygen gas into the oceans and atmosphere, bacteria that adapted their electron transport chains to exploit oxygen as the terminal electron acceptor gained higher energy yield and thus a competitive advantage. One line of aerobic bacteria took up an endosymbiotic relationship within a larger host cell, providing ATP in exchange for organic molecules. The endosymbiont was the evolutionary ancestor of mitochondria. This endosymbiosis must have occurred in the ancestor of all eukaryotes, because all existing eukaryotes have mitochondria (Martin and Mentel, 2010). The evidence for the endosymbiont origin of mitochondria can be found in:

  • the double membrane of mitochondria, where the inner membrane contains the electron transport chain, derived from the plasma membrane of the aerobic bacterial endosymbiont
  • the DNA of mitochondria, whose circular chromosome and genetic sequences resemble the alpha-proteo bacteria.
  • the ribosomes of mitochondria, that resemble prokaryotic ribosomes

Powered by hundreds or even thousands of mitochondria, eukaryotic cells attained larger sizes and evolved true multicellular lifestyles.

My video on this topic, 23min. (includes the 3 short segments excerpted above)

Powerpoint slides used in the video above: B1510_module3_5_respiration_2011Fall

Put it all together: Microbial fuel cells


Lane, N 2009 Was our oldest ancestor a proton-powered rock? New Scientist 19 October 2009

Lane, N, JF Allen, W Martin 2010 How did LUCA make a living? Chemiosmosis in the origin of life. BioEssays DOI 10.1002/bies.200900131

Martin, W. & Mentel, M. (2010) The Origin of Mitochondria. Nature Education 3(9):58

Stock D, Leslie AGW, Walker JE 1999 Molecular architecture of the rotary motor in ATP synthase. Science 286:1700–1705. Abstract/FREE Full Text

Watt, IN, MG Montgomery, MJ Runswick, AGW Leslie, JE Walker 2010 Bioenergetic cost of making an adenosine triphosphate molecule in animal mitochondria PNAS 107 : 16823-16827 doi:10.1073/pnas.1012260107

Written by: Jung Choion October 18, 2014.on September 7, 2016.

There are two organelles (chloroplasts and mitochondria) in the cell that are responsible for manufacturing consumable forms of energy in order for life to exist. In this AP Biology Crash Course Review, we will cover the information you need to know about both the mitochondria and the chloroplasts for the AP Bio exam. We will begin by summarizing the structure of the mitochondria and its function in the cell. We will then review the structure of the chloroplast and what its function in the cell is. Finally, we will then wrap up with a review and question that you might get about mitochondria and chloroplasts on your AP Biology exam!

Structure of the Mitochondria

Mitochondria are found in the cytoplasm of all eukaryotic cells. The mitochondria are made up of two membranes. The outer membrane is a smooth outer coating while the inner membrane is highly folded. The folds of the inner membrane are called the cristae. The folding of the inner membrane gives the mitochondria more surface area to perform many very important cellular respiration reactions. The inner area of the mitochondria is often referred to as the mitochondrial matrix. Within the mitochondria matrix, there is DNA, ribosomes, and enzymes to complete the reaction. Between the two membranes is a fluid filled space that will be important in cellular respiration (more specifically it will be the site of the proton pump).

Though most scientific drawings of the cell only include a single mitochondrion, there are often many mitochondria in the cell. The number of individual mitochondria is correlated with aerobic metabolic activity. The more activity that a cell partakes in the more energy it will need. For example, active cells like muscle cells and nerve cells will need a lot of mitochondria.

Cellular Respiration and the Mitochondria

The mitochondria function primarily to perform cellular respiration. Though glycolysis occurs in the cytoplasm, the Krebs cycle, which produces a vast amount of energy, occurs in the mitochondria.

The Krebs Cycle, also referred to as the citric acid cycle, begins when two pyruvate molecules enter the mitochondria from the cytoplasm after they have been created from the break down of glucose during glycolysis. The pyruvate molecules are then decarboxylated by the enzyme pyruvate dehydrogenase. Pyruvate dehydrogenase generates a NADH molecule and releases CO2 yielding acetyl-coA. This is where the cycle gets complex. You will have to memorize the entire cycle and all of the molecules if you study biological sciences in college, but for the AP Bio exam you luckily do not!

In this article, let’s focus just on what you need to know for the AP Biology exam.

The Krebs Cycle is an eight step pathway. Each step in the pathway is catalyzed by a specific enzyme. During the Krebs cycle, a six carbon citrate molecule will be broken down completely. The Krebs cycle will produce a large quantity of electron carriers NADH and FADH2. The electron carriers are the most important yield in the Krebs Cycle and will be used in the electron transport chain and oxidative phosphorylation.

The electron transport chain will also occur in the mitochondria and is why the cristae folds and the space in between the inner and outer membrane is so important. Within the inner mitochondrial membrane, there are a series of transport proteins built in. An electron carrier that was made during the Krebs Cycle will put an electron into a proton pump. The proton pump will then pass the electron through the series of proteins. During each movement of the electron, a proton is pumped into the inter-membrane space causing a difference in the concentration of protons in the inter-membrane space and the matrix. This concentration gradient is then used by the mitochondria to produce ATP. As the protons move into the matrix through the protein ATP synthase, they produce energy in the form of ATP.

As you can see, the mitochondria are essential in the creation of usable energy for the cell!

Chloroplast Structure

The chloroplast, similar to the mitochondria, has two membranes. The internal space of the chloroplast is named the stroma. The stroma contains DNA, ribosomes, and enzymes as well as thylakoid sacs. The thylakoid sacs are where ATP in the plant cell is created. The thylakoid sacs are arranged in stacks. The individual stacks are called grana.

Chloroplasts and Photosynthesis

Chloroplasts generate ATP and synthesize sugars in the plant cell. The chloroplasts are able to transform light energy from the sun into chemical energy. The chemical energy is then used to produce sugars from CO2 and H2O.

Photosynthesis can be divided into two sub cycles: the light cycle and the dark cycle. The light reactions occur on the thylakoid membrane. Light energy reacts with photosystem one which is embedded in the internal membranes. The light energy is then passed down from molecule to molecule until it reaches chlorophyll a. After reaching chlorophyll a the electron will move down the electron transport chain. Similar to the electron transport chain in cellular respiration, as the electron moves down the chain, ATP is created by allowing protons to enter into the thylakoid space. The electron is then excited again in photosystem II, where it will then move down the electron transport chain producing energy.

The dark reactions, or the Calvin Cycle, of photosynthesis, use the energy created in the light cycle to create carbohydrates from carbon dioxide. Again, this can get pretty messy, but you do not need to memorize the steps of the Calvin Cycle.

AP Biology Exam Question

We have discussed both the function and structure of chloroplasts and mitochondria. An important part of the AP Bio Exam is to compare and contrast different cycles and life forms. Here is an example from the AP Biology Exam from 2014. Let’s see how you can use your knowledge to get full credit!

Compare and contrast how ATP is made in the mitochondria (oxidative phosphorylation) and in the chloroplasts (photophosphorylation).



Source of EnergyHigh energy electrons from the Krebs cycleLight energy
Electron AcceptorsNADH, FADHPrimary electron acceptors like NADPH
Proton GradientElectrons are passed down from proteins that are embedded in the inner mitochondrial membrane. As electrons are passed down the electron chain, protons are passed from the inner to the outer compartment. The protons will form a chemiosmotic gradient.In a process very similar to the mitochondria, protons are passed from the stroma to the thylakoid space creating a chemiosmotic gradient.
ATP SynthesisProtons flow across the membrane through ATP synthase. The energy that is yielded from the protons coming into the mitochondrial matrix is used to add a phosphate group to ADP, generating ATP.This process is the same as the mitochondria, it even uses the same protein ATP synthase.
Final Electron AcceptorThe electron will combine with H+ and O2 to form H2O.The low energy electrons will be sent to photosystem I where they will be recycled to move through the electron transport chain again to form NADPH2.


There is a lot of information that you must know about the chloroplasts and mitochondria for your AP Biology Exam. In this article, Chloroplasts and Mitochondria: AP Biology Crash Course Review, we have reviewed the information that you must know for your AP Biology Exam. We first described the structure of the mitochondria and what its function in the cell is. We then reviewed the structure of the chloroplast and what its function in the cell is. Finally, we completed a free response question that was featured on a past AP Bio Exam.

Did you enjoy this article? Leave comments below and let us know how your studying is going! If you want more, please check out our article Cellular Respiration: AP Biology Crash Course Review!

Let’s put everything into practice. Try this AP Biology practice question:

Looking for more AP Biology practice?

Check out our other articles on AP Biology.

You can also find thousands of practice questions on lets you customize your learning experience to target practice where you need the most help. We’ll give you challenging practice questions to help you achieve mastery of AP Biology.

Start practicing here.

Are you a teacher or administrator interested in boosting AP Biology student outcomes?

Learn more about our school licenses here.

0 thoughts on “Chemiosmosis Ap Biology Essays

Leave a Reply

Your email address will not be published. Required fields are marked *